PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506481.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 239aa    MW: 27181.7 Da    PI: 4.7923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.7e-141049241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    ri ++s r+  + kR + ++KKAeE S+LCd+ vaviif 
  XP_016506481.1 10 RIRSESVRNSILNKRAASLFKKAEEFSILCDVAVAVIIFN 49
                    79999999999***************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.572150IPR002100Transcription factor, MADS-box
CDDcd001202.74E-13260No hitNo description
SuperFamilySSF554554.32E-17394IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-131050IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARKKLRHTR IRSESVRNSI LNKRAASLFK KAEEFSILCD VAVAVIIFNQ GEIQPIAYPS  60
ITQAKDILMS YLSFSEAERL KKLVKHETYL LEKVNEQEEK ISKIEKLNEG KEMDILFNQL  120
VEGKNTNELD ARQLKGLLKL SAAKMAKLNE RKKQFNQQDQ PSESLYRPSD FKPVCENVAN  180
QTSDLQDFVP ATNLMEDLIN NPWFVENMAA DQNEFGTESA PEEGNDNNAG DDGNPEDLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593028.11e-176PREDICTED: MADS-box transcription factor 22-like
RefseqXP_016506481.11e-176PREDICTED: MADS-box protein AGL71-like
TrEMBLM1DAJ04e-79M1DAJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859051e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-19AGAMOUS-like 96